Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    87.5     32        0    6.3
Qui1     Qui    95.0     40        0    7.0
Qui2     Qui   100.0     41        0    6.7
Qui3     Qui    93.8     16        0    4.5
Qui4     Qui    87.9     33        0    4.6
Rio1     Rio    90.3     31        0    4.2
Rio2     Rio    90.9     22        0    6.7
Rio3     Rio    82.4     17        0    2.7
Rio4     Rio    63.6     22        0    4.3