Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 32
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    51.9     27        1    6.6
Qui1     Qui    37.8     37        0    6.3
Qui2     Qui    36.8     19        1    4.5
Qui3     Qui    64.3     14        0    7.7
Qui4     Qui    75.0     16        1    4.7
Rio1     Rio    70.8     24        0    9.3
Rio2     Rio    91.7     12        0    5.4
Rio3     Rio    66.7     15        0    4.6
Rio4     Rio    65.5     29        0    8.1