Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

19 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0     22        0    3.5
Qui1     Qui    75.0     16        0    2.4
Qui2     Qui    60.0     15        0    3.5
Qui3     Qui    57.7     26        0    3.6
Qui4     Qui    86.8     38        0    4.2
Rio1     Rio    56.2     32        0    5.9
Rio2     Rio    54.2     24        0    3.6
Rio3     Rio    80.0     15        1    3.2
Rio4     Rio   100.0      6        0    1.9