Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    30.1     83        0   97.0
Qui1     Qui    40.0     20        0   29.0
Qui2     Qui    38.5     26        0   37.5
Qui3     Qui    66.7      9        0   18.0
Qui4     Qui    22.2      9        0   13.0
Rio1     Rio    14.8     27        0   37.5
Rio2     Rio    13.2     38        0   41.5
Rio3     Rio     0.0     11        0   13.0
Rio4     Rio    22.6     31        0   48.5