Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 49
  seen in >= 2 oysters: 13
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

21 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     6.2    162        1    7.9
Qui1     Qui    11.1     72        0    4.7
Qui2     Qui    31.5     73        0    3.4
Qui3     Qui     6.8     44        0    2.8
Qui4     Qui     0.0     67        0    3.5
Rio1     Rio    49.6    121        0    6.2
Rio2     Rio    38.0    121        0    5.6
Rio3     Rio    46.1     76        0    4.1
Rio4     Rio    50.0     80        0    3.8