Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        0    8.0
Qui1     Qui    66.7      3        0   10.5
Qui2     Qui    25.0      4        0    7.0
Qui3     Qui              0        0    5.0
Qui4     Qui    50.0      2        0   14.0
Rio1     Rio    80.0      5        0   11.0
Rio2     Rio   100.0      4        0   14.0
Rio3     Rio   100.0      1        0    6.0
Rio4     Rio    75.0      4        0    8.0