Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 14
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     8.8    125        0    5.8
Qui1     Qui    13.2    121        0    7.9
Qui2     Qui     9.0     78        0    5.7
Qui3     Qui     2.7     74        0    5.8
Qui4     Qui     1.1     92        0    4.7
Rio1     Rio    40.9     66        0    8.7
Rio2     Rio    65.0     60        1    7.8
Rio3     Rio    16.5     85        0    4.5
Rio4     Rio    14.6     41        0    4.6