Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

30 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0     44        1    9.9
Qui1     Qui    43.4    106        0   15.6
Qui2     Qui    25.0     16        0    2.7
Qui3     Qui     0.0     49        0   19.0
Qui4     Qui     0.0     57        0    6.6
Rio1     Rio    45.7     35        0    8.2
Rio2     Rio    44.4     36        0   11.4
Rio3     Rio     0.0     29        0    1.5
Rio4     Rio    40.0     40        0    7.3