Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

23 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     4.0     25        0    8.3
Qui1     Qui    48.0     75        0   13.0
Qui2     Qui    20.0     35        0    5.3
Qui3     Qui    33.3     51        0   10.8
Qui4     Qui    27.0     37        0    6.4
Rio1     Rio    10.4     48        0   13.6
Rio2     Rio     0.0     24        0    6.1
Rio3     Rio     0.0     46        0    8.7
Rio4     Rio     4.2     24        0    7.7