Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.0     20        0   45.5
Qui1     Qui    18.2     11        0   27.0
Qui2     Qui     0.0      9        0   28.5
Qui3     Qui     0.0      5        0   22.0
Qui4     Qui     5.6     18        0   44.5
Rio1     Rio    20.0     15        0   31.5
Rio2     Rio    40.0     10        0   18.0
Rio3     Rio    33.3     12        0   25.0
Rio4     Rio    30.8     13        0   28.5