Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 40
  seen in >= 2 oysters: 14
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    13028756 G>T  Pum=0.2  Qui=0.839  Rio=0.016

25 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    12.1    132        0    7.3
Qui1     Qui    50.2    400        0   16.9
Qui2     Qui    47.6    227        0   12.2
Qui3     Qui    74.1   1021        0   41.2
Qui4     Qui    61.6    645        0   25.7
Rio1     Rio    22.3    318        0   15.9
Rio2     Rio    23.1     39        0    2.0
Rio3     Rio     4.6    109        0    6.2
Rio4     Rio    27.6    192        0    9.9