Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

36 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.3     43        0    4.1
Qui1     Qui    27.1     70        0    5.2
Qui2     Qui     8.0     25        0    4.9
Qui3     Qui     0.0     56        0    4.8
Qui4     Qui    61.9     21        0    4.0
Rio1     Rio     9.6     52        0    7.4
Rio2     Rio     8.1     62        0    5.4
Rio3     Rio              0        0    0.4
Rio4     Rio     9.7     31        0    3.8