Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    18.2     44        0    7.5
Qui1     Qui    52.5     59        0    7.2
Qui2     Qui    36.2     47        0    6.8
Qui3     Qui    26.9     52        0    6.6
Qui4     Qui    52.4     42        0    6.9
Rio1     Rio    58.2     67        0    8.6
Rio2     Rio    51.4     74        0    8.1
Rio3     Rio    50.0     44        0    6.1
Rio4     Rio    55.1     78        0   11.1