Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

13 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    36.1     36        0    9.6
Qui1     Qui    52.6     38        0    8.0
Qui2     Qui    72.6     62        0   13.6
Qui3     Qui    72.5     40        0   11.3
Qui4     Qui    28.1     32        1    5.9
Rio1     Rio    28.9     45        0   12.6
Rio2     Rio    34.9     43        0    8.4
Rio3     Rio    26.4     53        0    8.5
Rio4     Rio     8.3     36        0   12.8