Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     32        0    9.5
Qui1     Qui    21.2     33        0    7.7
Qui2     Qui    34.6     26        0    8.0
Qui3     Qui    32.1     28        0    8.3
Qui4     Qui    24.0     25        0    5.7
Rio1     Rio     4.0     25        0    9.4
Rio2     Rio    17.4     23        0    7.9
Rio3     Rio     0.0     18        0    5.9
Rio4     Rio     2.2     46        0   10.9