Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 14
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

22 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      3        0    7.1
Qui1     Qui    71.4     35        0    9.7
Qui2     Qui   100.0      6        0   16.1
Qui3     Qui    66.7      9        0   11.0
Qui4     Qui              0        0    5.6
Rio1     Rio    45.0     20        0    9.6
Rio2     Rio    36.0     25        0   12.0
Rio3     Rio    41.2     17        0   13.5
Rio4     Rio    45.5     11        1    7.3