Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     40        0   12.1
Qui1     Qui    46.7     15        0    6.6
Qui2     Qui    47.2     36        0    9.0
Qui3     Qui    52.5     40        0    8.3
Qui4     Qui     0.0     24        0    6.8
Rio1     Rio     0.0     32        0   11.2
Rio2     Rio     0.0     49        0   12.4
Rio3     Rio     0.0     41        0    9.4
Rio4     Rio     6.7     45        0    8.5