Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    51.7     29        0    7.7
Qui1     Qui    20.8     24        0    6.4
Qui2     Qui    36.4     11        0    5.2
Qui3     Qui    21.1     19        0    6.4
Qui4     Qui    40.0     25        0    7.2
Rio1     Rio    38.5     39        0    7.6
Rio2     Rio    53.8     39        0    8.0
Rio3     Rio    44.4     36        0    8.4
Rio4     Rio    30.8     26        0    6.3