Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    59.5     42        0    9.6
Qui1     Qui    38.6     44        0    8.1
Qui2     Qui    44.8     29        0    7.6
Qui3     Qui    24.2     33        0    9.3
Qui4     Qui    33.3     21        0    7.5
Rio1     Rio    54.2     24        0    9.7
Rio2     Rio    46.9     32        0    9.2
Rio3     Rio    52.4     21        0    6.2
Rio4     Rio    55.8     43        0   10.3