Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

13 CpGs in target; 13 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     3.4     88        0   10.3
Qui1     Qui    11.1    108        0    8.4
Qui2     Qui    20.5     83        0   10.3
Qui3     Qui     7.1     70        0    7.4
Qui4     Qui     5.7     53        0    5.4
Rio1     Rio    41.1     90        0   12.3
Rio2     Rio    24.1     79        0   12.8
Rio3     Rio    21.0     62        0    8.8
Rio4     Rio    33.3     66        0    8.9