Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.9     44        0    7.7
Qui1     Qui    71.0     31        0    7.9
Qui2     Qui    29.3     41        0    8.7
Qui3     Qui    48.1     54        0    9.8
Qui4     Qui    55.6     45        0    8.1
Rio1     Rio    70.0     40        0    9.3
Rio2     Rio    57.9     38        0    7.4
Rio3     Rio    59.0     39        0    8.9
Rio4     Rio    74.5     47        0    7.6