Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

29 CpGs in target; 16 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    59.3    172        0   11.7
Qui1     Qui     7.2     83        0    7.2
Qui2     Qui     0.8    124        0    8.7
Qui3     Qui     0.0    126        0    8.5
Qui4     Qui    16.0    131        0    8.7
Rio1     Rio    66.1    121        0    9.4
Rio2     Rio    39.3    135        0    9.0
Rio3     Rio    71.6    116        0    7.7
Rio4     Rio    43.4    145        0    8.3