Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 24
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

26 CpGs in target; 23 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    45.7    116        0    9.3
Qui1     Qui     1.3     76        0    5.6
Qui2     Qui     1.6    128        0    9.1
Qui3     Qui     1.0    103        0    8.3
Qui4     Qui     3.2     94        0    5.4
Rio1     Rio    46.8    126        0   11.7
Rio2     Rio    38.9     36        0    7.2
Rio3     Rio    61.1    113        0    8.1
Rio4     Rio    70.8    144        0   10.2