Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 44
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 14 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     23        0   10.8
Qui1     Qui    89.1     46        0    8.9
Qui2     Qui    91.1     56        0   11.1
Qui3     Qui    86.0     50        0   14.5
Qui4     Qui    92.2     51        0   11.8
Rio1     Rio    55.8     43        0   18.1
Rio2     Rio     0.0     37        0   12.3
Rio3     Rio     0.0     47        0   14.6
Rio4     Rio     0.0     43        0   12.9