Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    47899778 G>A  Pum=0.0  Qui=0.0  Rio=0.562

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      5        0    7.5
Qui1     Qui   100.0      6        0    8.0
Qui2     Qui   100.0      5        0   11.0
Qui3     Qui    66.7      3        0    5.5
Qui4     Qui   100.0      2        0    6.5
Rio1     Rio    50.0      2        0    5.0
Rio2     Rio    33.3      6        0    6.0
Rio3     Rio    33.3      3        0    8.0
Rio4     Rio    40.0      5        0    8.0