Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 16
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

20 CpGs in target; 14 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.7    144        0   13.5
Qui1     Qui    88.7     71        0    7.0
Qui2     Qui    57.7     71        0    6.9
Qui3     Qui    88.2     85        0   11.2
Qui4     Qui    32.0     50        0    5.4
Rio1     Rio    13.1     84        0    8.0
Rio2     Rio     0.0     67        0    8.4
Rio3     Rio    12.2     82        0    8.3
Rio4     Rio     5.7     53        0    9.1