Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 20 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    17.1     82        0    9.5
Qui1     Qui    46.8     94        0    7.8
Qui2     Qui    33.9     59        0    9.9
Qui3     Qui    72.3    101        0   11.5
Qui4     Qui    12.1     58        0    6.1
Rio1     Rio    95.0    120        0   10.8
Rio2     Rio    91.5     82        0   10.4
Rio3     Rio    58.9     56        0    7.3
Rio4     Rio    90.2     92        0   13.6