Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

14 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    78.3     46        0    5.6
Qui1     Qui    86.1     36        0    4.7
Qui2     Qui    56.1     57        0    9.5
Qui3     Qui    76.7     30        0    7.5
Qui4     Qui    51.3     39        0    4.8
Rio1     Rio    73.0     63        0   10.8
Rio2     Rio    79.6     54        0    9.0
Rio3     Rio    81.5     27        0    7.0
Rio4     Rio    75.0     40        0    6.0