Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

19 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    85.7     49        0    5.3
Qui1     Qui    86.9     61        0    7.9
Qui2     Qui    96.1     76        0    6.0
Qui3     Qui    79.5     44        0    7.1
Qui4     Qui    72.4     29        1    6.2
Rio1     Rio    70.9     55        0    8.2
Rio2     Rio    57.5     40        0    7.0
Rio3     Rio    64.1     39        0    5.5
Rio4     Rio    76.4     72        0    9.3