Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     3.6     56        0    8.2
Qui1     Qui    43.1     51        0    8.0
Qui2     Qui    80.4     56        0    8.3
Qui3     Qui    86.5     52        0    8.1
Qui4     Qui    70.7     41        0    6.0
Rio1     Rio    28.8     59        0    7.0
Rio2     Rio     3.7     54        0    7.4
Rio3     Rio     7.4     54        0    8.0
Rio4     Rio     3.8     79        0    9.7