Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     17        0    8.7
Qui1     Qui    60.0     30        0   10.5
Qui2     Qui    53.1     32        0    9.1
Qui3     Qui    46.2     13        0   10.3
Qui4     Qui    50.0     12        0    9.7
Rio1     Rio     0.0     22        0   11.3
Rio2     Rio     0.0     18        0   10.0
Rio3     Rio     0.0     10        0   11.0
Rio4     Rio     3.7     27        0    8.8