Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

39 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     26        0    2.7
Qui1     Qui     0.0     67        0    5.9
Qui2     Qui    21.4     70        0    5.4
Qui3     Qui     0.0     88        0    7.9
Qui4     Qui     1.9    106        0    8.1
Rio1     Rio    62.4     85        0    8.5
Rio2     Rio    20.5     73        0    5.3
Rio3     Rio    39.6    111        0    6.4
Rio4     Rio    28.4    116        0    8.1