Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

40 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0     18        2    4.5
Qui1     Qui    68.3     41        0    4.0
Qui2     Qui   100.0     10        0    1.8
Qui3     Qui    74.2     31        0    2.8
Qui4     Qui    95.0     20        0    2.4
Rio1     Rio    40.4     52        0    4.5
Rio2     Rio    32.4     68        1    5.5
Rio3     Rio    44.8     29        0    1.3
Rio4     Rio     4.2     95        0    5.0