Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 36
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

36 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    62.8    121        0   10.1
Qui1     Qui    11.8    110        0    6.1
Qui2     Qui    27.2     92        0    7.1
Qui3     Qui    27.4    117        1    8.7
Qui4     Qui    35.3    102        0    8.0
Rio1     Rio    68.5    127        0   11.5
Rio2     Rio    56.7     90        0    8.4
Rio3     Rio    76.0    100        0    8.3
Rio4     Rio    56.5    131        0    9.2