Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    54.8     73        0   10.8
Qui1     Qui    38.5     65        0    7.7
Qui2     Qui    50.0     40        0    6.0
Qui3     Qui    33.3     66        0    7.9
Qui4     Qui    55.7     61        0    8.3
Rio1     Rio    65.1     86        0    9.0
Rio2     Rio    75.6     45        0    7.7
Rio3     Rio    63.1     65        0    8.9
Rio4     Rio    60.9     92        0   11.5