Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 48
  seen in >= 2 oysters: 13
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 2]
    18803008 G>A  Pum=0.0  Qui=0.444  Rio=1.0
    18803063 G>T  Pum=0.0  Qui=0.474  Rio=1.0
    18803634 A>T  Pum=0.0  Qui=0.379  Rio=0.923
    18803635 A>T  Pum=0.0  Qui=0.379  Rio=0.925
    18803811 G>A  Pum=0.0  Qui=0.364  Rio=1.0
    18803849 C>A  Pum=0.0  Qui=0.267  Rio=0.944
    18803962 C>A  Pum=0.0  Qui=0.118  Rio=0.938

33 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.3    144        0   11.2
Qui1     Qui     1.4     72        0    3.9
Qui2     Qui    88.4    181        0   10.7
Qui3     Qui    52.3    151        0   10.3
Qui4     Qui    82.1     84        0    6.7
Rio1     Rio     0.0     72        1    6.4
Rio2     Rio     0.9    116        0    6.6
Rio3     Rio     1.8    113        0    6.7
Rio4     Rio     0.0     66        0    6.6