Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    16471370 T>C  Pum=1.0  Qui=0.778  Rio=0.214
    16471381 T>A  Pum=1.0  Qui=0.773  Rio=0.143
    16471383 G>A  Pum=  Qui=0.733  Rio=0.077
    16471392 G>A  Pum=  Qui=0.786  Rio=0.154

17 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    30.3     76        0    5.3
Qui1     Qui    57.3     96        0    7.3
Qui2     Qui     3.6     55        0    4.1
Qui3     Qui    61.9     84        0    5.5
Qui4     Qui    67.6     74        0    4.5
Rio1     Rio    21.5     79        0    5.4
Rio2     Rio     0.0     62        0    4.8
Rio3     Rio    21.3     75        0    5.7
Rio4     Rio     0.0     81        0    6.5