Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    15958605 G>A  Pum=1.0  Qui=1.0  Rio=0.5
    15958668 G>T  Pum=0.857  Qui=1.0  Rio=0.391

14 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    46.8     77        0    8.3
Qui1     Qui    73.7     99        0    8.7
Qui2     Qui    73.2     97        0    7.6
Qui3     Qui    71.1    128        0    9.0
Qui4     Qui    41.2     51        0    4.2
Rio1     Rio    50.8     59        0    7.7
Rio2     Rio    36.7     90        0    7.9
Rio3     Rio    32.1     78        0    6.0
Rio4     Rio    26.0    150        0   11.8