Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    23.5     51        0    7.6
Qui1     Qui    25.9     27        0    7.0
Qui2     Qui    27.0     37        0    6.7
Qui3     Qui    11.1     36        0    7.9
Qui4     Qui    34.5     29        0    7.1
Rio1     Rio    60.3     63        0    7.8
Rio2     Rio    51.7     60        0   10.5
Rio3     Rio    40.5     42        0    6.1
Rio4     Rio    25.0     28        0    5.2