Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 40
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    16.0     50        0    4.5
Qui1     Qui    12.9     62        0    5.0
Qui2     Qui    36.5     74        0    5.2
Qui3     Qui    33.7     89        0    9.3
Qui4     Qui     7.7     39        0    4.8
Rio1     Rio    30.4     46        0    6.7
Rio2     Rio     9.3     43        0    3.9
Rio3     Rio    17.1     35        0    3.6
Rio4     Rio    13.0     54        0    7.0