Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 10
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    12751017 G>A  Pum=  Qui=0.842  Rio=0.083
    12751053 G>T  Pum=  Qui=0.905  Rio=0.091
    12751054 A>C  Pum=0.0  Qui=0.76  Rio=0.1

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      3        0    5.0
Qui1     Qui     0.0      4        0    7.0
Qui2     Qui     0.0      4        0    5.0
Qui3     Qui     0.0      2        0    5.0
Qui4     Qui    11.1      9        0    9.0
Rio1     Rio    66.7      3        0    5.0
Rio2     Rio    80.0      5        0    9.5
Rio3     Rio    80.0      5        0    6.0
Rio4     Rio   100.0      7        0    9.5