Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    82.5     80        0    8.4
Qui1     Qui    44.0     75        0    6.8
Qui2     Qui    27.0    100        0    7.8
Qui3     Qui    25.3     79        0    7.9
Qui4     Qui    44.4     81        0    5.8
Rio1     Rio    50.0     92        0    8.2
Rio2     Rio    66.7     57        0    5.5
Rio3     Rio    69.6     92        0    7.1
Rio4     Rio    64.2     67        0    6.3