Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    71.4     49        0    7.3
Qui1     Qui    51.4     37        0    5.9
Qui2     Qui    53.3     60        0    7.5
Qui3     Qui    85.2     27        0    8.2
Qui4     Qui    52.4     42        0    6.3
Rio1     Rio    73.0     37        0    9.2
Rio2     Rio   100.0     26        0    5.6
Rio3     Rio    68.2     44        0    8.7
Rio4     Rio    94.1     34        0    8.4