Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    90225673 G>T  Pum=  Qui=0.556  Rio=0.0
    90225698 G>A  Pum=1.0  Qui=0.6  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0   13.0
Qui1     Qui     0.0      1        0    5.0
Qui2     Qui     0.0      1        0   13.0
Qui3     Qui    16.7      6        0   10.0
Qui4     Qui    50.0      2        0    8.0
Rio1     Rio    87.5      8        0   14.0
Rio2     Rio    71.4      7        0   13.0
Rio3     Rio   100.0      7        0   13.0
Rio4     Rio    50.0      4        0   13.0