Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    89966793 C>T  Pum=0.692  Qui=0.667  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      5        1   18.5
Qui1     Qui     0.0      7        1   12.0
Qui2     Qui    11.1      9        1   17.5
Qui3     Qui    33.3      6        1   13.0
Qui4     Qui     0.0      6        1   12.0
Rio1     Rio    80.0     10        0   18.0
Rio2     Rio   100.0      5        0   13.0
Rio3     Rio    90.9     11        0   19.0
Rio4     Rio    91.7     12        0   18.0