Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     1.4     70        0    7.6
Qui1     Qui     0.0     18        0    2.9
Qui2     Qui     0.0     11        0    0.5
Qui3     Qui     4.3     46        0    5.9
Qui4     Qui     0.0     24        0    4.1
Rio1     Rio    22.9     35        0    7.0
Rio2     Rio    22.2     27        0    3.9
Rio3     Rio     0.0     38        0    4.7
Rio4     Rio    14.5     62        0    5.8