Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    78.6     14        0   21.5
Qui1     Qui     4.8     21        0   26.0
Qui2     Qui     3.7     27        0   31.0
Qui3     Qui     0.0     18        0   23.5
Qui4     Qui    12.5     16        0   25.5
Rio1     Rio    68.8     16        0   26.0
Rio2     Rio    62.5     16        0   31.0
Rio3     Rio    66.7     18        0   23.0
Rio4     Rio    23.8     21        0   29.5