Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 15
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

6 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    82.6     23        0    7.3
Qui1     Qui    30.9     68        0   18.7
Qui2     Qui    28.6     63        0   15.7
Qui3     Qui    34.2     73        0   17.7
Qui4     Qui    33.3     45        0   16.9
Rio1     Rio    41.7     24        0    7.5
Rio2     Rio    47.6     63        0   16.6
Rio3     Rio    50.0     38        0   14.2
Rio4     Rio    60.0     45        0   14.2