Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 25
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    8665421 T>A  Pum=0.0  Qui=0.719  Rio=0.174
    8665469 G>T  Pum=0.0  Qui=0.75  Rio=0.176
    8665947 G>A  Pum=  Qui=0.824  Rio=0.25

7 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.3     24        0    7.2
Qui1     Qui    48.1     27        1    5.9
Qui2     Qui    45.2     31        1    8.7
Qui3     Qui    92.3     13        0    5.6
Qui4     Qui    67.9     28        1    7.1
Rio1     Rio    67.9     28        0    9.0
Rio2     Rio    87.0     23        0    6.4
Rio3     Rio    66.7     18        1    5.9
Rio4     Rio    84.2     38        0    6.8