Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    84983931 C>T  Pum=0.5  Qui=0.971  Rio=0.396

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      1        1    7.0
Qui1     Qui     0.0      6        1   13.0
Qui2     Qui     0.0      3        1   10.5
Qui3     Qui     0.0      2        1   13.0
Qui4     Qui     0.0      2        1   10.0
Rio1     Rio   100.0      1        1   13.0
Rio2     Rio              0        1   17.0
Rio3     Rio              0        0   10.0
Rio4     Rio    25.0      4        1   18.0